Gsea parsing trouble
WebMar 25, 2024 · This often happens when the file is created in Excel and saved as tab-separated values, as Excel often tacks on an extra ".TXT" extension to the file name. Also, some operating systems will hide...
Gsea parsing trouble
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WebJan 4, 2024 · 1. GCTParser line 140-143: List colnames = ParseUtils.string2stringsList (currLine, "\t"); // colnames can have spaces colnames.remove (0); // first elem is always … WebFeb 22, 2014 · The input you are attempting to parse "60 45 100 30 20" is not a number. Try splitting input on space and parse each element: for (String s : input.split(" ")) { // parse s }
Webjava - 将txt文件加载到GSEA时出现Java错误 标签 java r 我正在尝试上载包含基因表达数据的 text file 以进行 GSEA 分析，并且出现以下Java错误： ---- Full Error Message ---- There were errors: ERROR (S) #:1 Parsing trouble java.lang.NumberFormatException: ... WebJan 7, 2024 · 1 Answer. You seem to have forgotten the space after the #. It should be as in here (Just for future readers know where to find the specs). Also it should be a …
WebJan 11, 2024 · I am currently facing problems uploading my annotations file on the GSEA desktop application. GSEA Version 4.1.0. Windows 10 64-bit. Java version 8 Update 271 (build 1.8.0_271-b09) I have used the same chip file in the past, using a previous version of GSEA and never faced problems while uploading. The file is created as instructed in the … Web#1 Parsing trouble java.lang.NumberFormatException in GSEA 4.2.1 I am getting the following error message when I tried to load .TXT data file to GSEA 4.2.1. I tried different …
WebSep 25, 2016 · GSEA on Linux Browser links do not work under Linux. Problem: When running the GSEA desktop application under Linux, buttons and links that would normally open a browser window do not open the browser window. Work-around: After running an analysis, you cannot click on the Success link to display the result.However, you can go …
WebJun 12, 2024 · My gene expression file contains microarray data of post-mortem human brains, mapped into 34 cortical regions, i.e., it encompasses ~20,000 genes expressed in 34 cortical regions (~20,000 x 34 matrix). I am now struggling with my phenotype file. So, the gene expression data stem from different subjects than the cortical thickness data. flights from hartford to californiaWebJan 19, 2024 · #1 Parsing trouble java.lang.NumberFormatException in GSEA 4.2.1 Ask Question Asked 1 year, 2 months ago Modified 1 year, 2 months ago Viewed 2k times 1 I am getting the following error message when I tried to load .TXT data file to GSEA 4.2.1. … cheri hodgesWebApr 3, 2024 · Parsing trouble java.lang.IllegalStateException: .. -- You received this message because you are subscribed to the Google Groups "gsea-help" group. To unsubscribe from this group and stop... cheri hoWebFeb 3, 2024 · IF it starts with the “#1.2” line, then the file extension needs to be changed to .GCT, or it can be left as .txt, but the first two rows (the one specifying the GCT #1.2 format, and the one specifying the array dimensions) will have to be removed. You received this message because you are subscribed to the Google Groups "gsea-help" group. flights from hartford to charleston scWebJul 16, 2024 · 1 Answer Sorted by: 0 Likely the file type is incorrect. In this format, it would need to be saved as a .gct file. Otherwise, you could remove the top two rows and save as a .txt file. Explanation of accepted file types and formats can be found here. Share Improve this answer Follow edited Apr 1, 2024 at 5:27 Yunus Temurlenk 3,870 4 16 38 cheri hodny grand forksWebAll groups and messages ... ... cheri hodsonWebWith 2 phenotypes, e.g. Case and Control, the ranking is the opposite, correct. However, I can test Case by looking at genes upregulated using the "Case" ranking (top genes upregulated in Case), or by looking at genes … cheri hilsabeck